Fragment Analyzer

Introducing one powerful instrument to cover the full spectrum of DNA, gDNA and RNA quality control. The Fragment Analyzer™ Automated CE System does everything from high-resolution analysis to fast DNA separations, across the widest separation range.

AATI Scientist looking at data

Fragment Analyzer Publications

Applications

Medical (12)

Uppsala University Sweden NGS Oseltamivir Resistant Influenza A (H1N1) Virus Strain

Mayo Clinic An Optimized TALEN application for mutagenesis and screening in drosophila

Institut Pasteur France NGS Characterization of first clostridium baratii strain responsible for outbreak of botulism type F in France

Peking University - NGS sample quality checks of mouse embryonic stem cells

Peking University NGS Demethylation of pronuclear DNA in the mammalian zygote

Childrens Hospital Oakland - DNA storage under extreme temps HLA genotyping via Next Gen Sequencing

University of Missouri NGS Effect of omeprazole on development of experimental autoimmune encephalomyelitis

Michigan State University Aspergillus parasiticus SU-1 genome sequence predicted

EPFL Switzerland RNA sequencing_Screen to identify inhibitors of mycobacterial virulence protein secretion

University of Tasmania Australia RNA quantification Listeria monocytogenes proteomic responses and associated influence of strain genetics

Johannes Gutenberg University Mainz Germany - Direct quantification of cell-free circulating DNA from unpurified plasma

Genethon INSERM CNRS France Serum profiling to identify miRNA and miRNA biomarkers

Cancer Research (7)

Plant sciences (37)

Seoul National University Translational genomics for plant breeding with genome sequence explosion

East Malling Research UK NGS Amplicon based metagenomics identified candidate organisms in soils that caused yield decline in strawberry

Hungarian Academy of Sciences Flow sorting of C genome chromosomes from wild relatives of wheat

Intl Rice Research Institute Philippines Development and validation of SNP based functional codominant markers for two major disease resistance genes in rice

Intl Rice Research Institute Philippines High Throughput SNP Genotyping to Accelerate Crop Improvement

Kyungpook National University South Korea THO2 is required for microRNA production in Arabidopsis

Seoul National University South Korea Comprehensive survey of genetic diversity in chloroplast genomes and 45S nrDNAs within Panax ginseng species

Dupont Pioneer NGS Southern by sequencing screening for molecular characterization of genetically modified crops

Chinese Institute of Botany - TILLiNG for genotyping SNPs and InDels

USDA Minnesota - Biomarkers for wheat

USDA Maryland - EST markers for blueberry

USDA Maryland - Genetic map for cranberry

USDA Maryland - Blueberry genetic linkage map

IPK Gatersleben Germany - Mapping by sequencing accelerates forward genetics in barley

IPK Gatersleben Germany - Molecular markers in wheat

IPK Gatersleben Germany - Plant viruses and Protein Disulfide Isomerase

University of Copenhagen Denmark Microsatellite primers for indigenous fruit tree

University of Torino Italy - QTLs and linkage map for eggplant

Hungarian Academy of Sciences Intergenic hybrids and haploids from new wheat-barley crosses

Hungarian Academy of Sciences - PCR product analysis of barley genes

Seoul National University South Korea - Transciptome sequencing & construction of EST-based genetic map for cabbage

Seoul National University South Korea - Molecular markers in Brassica Rapa

Seoul National University South Korea - Genome duplication by sequence analysis of Ginseng

University of Chile - Whole genome comparison of table and wine grapes

UENF Brazil (Portuguese) - Effect of recurrent selection of breeding corn popcorn by SSR markers

UENF Brazil - Molecular characterization of inbred lines of yellow Jalapeno pepper

UNICAMP Brazil_Expressed sequence tags from the rubber tree

EMBRAPA Brazil (Portuguese) - SSR markers for giant coconut

University of Sao Paulo Brazil - Microsatellite markers for tropical trees

University of Nebraska-Lincoln Phenotypic diversity in Sorghum bicolor

Oklahoma State University - Genomic SSR markers in African bermudagrass

Oklahoma State University EST-SSR markers in switchgrass

West Virginia State Integrated genetic map of watermelon

West Virginia State - Linkage disequilibrium & population-structure analysis among pepper cultivars

West Virginia State_Genome wide scan and association mapping using microsatellite markers in watermelon

West Virginia State_Genetic diversity & association mapping of bacterial blight with microsatellite markers in pomegranate from India

University of Georgia - Mapping of genes for soybean nematodes

Animals (14)

Ehime University Japan Isolation & characterization of tandem repeat sequences in growth hormone gene of red seabream

University of Oregon Reproductive Mode & Evolution of Genome Size & Structure in Caenorhabditis Nematodes

Washington State Univ & INIA Spain Oviduct embryo interactions in cattle two way street or a one way street

Mayo Clinic An Optimized TALEN application for mutagenesis & screening in drosophila

Peking University - NGS sample quality checks of mouse embryonic stem cells

University of Missouri NGS Composition of fecal microbiota of inbred mice

University of Missouri Animal Sciences High throughput sequencing using low amounts of genomic DNA

National University Singapore Comparing effectiveness of metagenomics for diet analysis of leaf-feeding monkey

Cornell University RNA Canine corneal organ culture model to study acute herpes keraitis

University of Wisconsin-Madison - RNA sequencing sample quality checks of bovine embryo

Izmir Institute Technology Turkey Genome simple sequence repeat markers reveal patterns of genetic relatedness & diversity in sesame

Soonchunhyang University South Korea - Molecular markers for Bull-head catfish

Soonchunhyang University South Korea - Molecular markers for freshwater fish

University of Georgia_Exon capture system for entire class Ouphiuroidea

Biofuels (5)

Academia/government (6)

Insects (4)

Industries

NGS (21)

Seoul National University Translational genomics for plant breeding with genome sequence explosion

Amyris Low cost high thruput sequencing of DNA assemblies using a highly multiplexed Nextera process

East Malling Research UK NGS Amplicon based metagenomics identified candidate organisms in soils that caused yield decline in strawberry

Novartis Institutes NGS Studying clonal dynamics in response to cancer therapy using high complexity barcoding

Uppsala University Sweden NGS Oseltamivir Resistant Influenza A (H1N1) Virus Strain

Stanford University Quake Lab NGS Brain tumor mutations detected in cerebral spinal fluid

Wellcome Trust Sanger Institute UK - SASI-Seq & 384 barcoding for Illumina sequencing

EMBL Germany NGS Potential of fecal microbiota for early-stage detection of colorectal cancer

Institut Pasteur France NGS Characterization of first clostridium baratii strain responsible for outbreak of botulism type F in France

Peking University - NGS sample quality checks of mouse embryonic stem cells

Peking University NGS Demethylation of pronuclear DNA in the mammalian zygote

Childrens Hospital Oakland - DNA storage under extreme temps HLA genotyping via Next Gen Sequencing

Tohoku University Japan NGS SNP calls by additional exome analysis

Dupont Pioneer NGS Southern by sequencing screening for molecular characterization of genetically modified crops

University of Georgia NGS High thruput sequencing to locate unknown DNA junction fragments

University of Missouri NGS Composition of fecal microbiota of inbred mice

University of Missouri NGS Effect of omeprazole on development of experimental autoimmune encephalomyelitis

University of Missouri Animal Sciences High throughput sequencing using low amounts of genomic DNA

Michigan State University Aspergillus parasiticus SU-1 genome sequence predicted

University of Lausanne Switzerland Quantifying ChIP-seq data

IPK Gatersleben Germany - Mapping by sequencing accelerates forward genetics in barley

Genome (37)

Hungarian Academy of Sciences Flow sorting of C genome chromosomes from wild relatives of wheat

Intl Rice Research Institute Philippines Development & validation of SNP based functional codominant markers for two major disease resistance genes in rice

Intl Rice Research Institute Philippines High Throughput SNP Genotyping to Accelerate Crop Improvement

Seoul National University South Korea Comprehensive survey of genetic diversity in chloroplast genomes and 45S nrDNAs within Panax ginseng species

University of Oregon Reproductive Mode & Evolution of Genome Size & Structure in Caenorhabditis Nematodes

Washington State Univ & INIA Spain Oviduct embryo interactions in cattle_two way street or a one way street

Mayo Clinic An Optimized TALEN application for mutagenesis & screening in drosophila

Ambry Genetics BRCAplus High Risk Breast Cancer Diagnostic Assay

San Diego State Univ genomic DNA analysis Simplified genome skimming methods for phylogenetic systematic studies

Johannes Gutenberg University Mainz Germany - Direct quantification of cell-free circulating DNA from unpurified plasma

MIT with Wuhan Univ & Shanghai Univ China & PacBio Genomic mapping of phosphorothioates

Amyris Inc. - Rapid reliable DNA assembly via ligase cycling reaction

Amyris Inc. - Structural DNA Assembly

USDA Minnesota - Biomarkers for wheat

USDA Maryland - EST markers for blueberry

USDA Maryland - Genetic map for cranberry

USDA Maryland - Blueberry genetic linkage map

IPK Gatersleben Germany - Molecular markers in wheat

IPK Gatersleben Germany - Plant viruses and Protein Disulfide Isomerase

University of Torino Italy - QTLs and linkage map for eggplant

Hungarian Academy of Sciences Intergenic hybrids and haploids from new wheat-barley crosses

Izmir Institute Technology Turkey Genome simple sequence repeat markers reveal patterns of genetic relatedness & diversity in sesame

Seoul National University South Korea - Transciptome sequencing & construction of EST-based genetic map for cabbage

Seoul National University South Korea - Molecular markers in Brassica Rapa

Seoul National University South Korea - Genome duplication by sequence analysis of Ginseng

Soonchunhyang University South Korea - Molecular markers for Bull-head catfish

Soonchunhyang University South Korea - Molecular markers for freshwater fish

University of Chile - Whole genome comparison of table and wine grapes

UENF Brazil - Molecular characterization of inbred lines of yellow Jalapeno pepper

UNICAMP Brazil Expressed sequence tags from the rubber tree

University of Sao Paulo Brazil - Microsatellite markers for tropical trees

University of Nebraska-Lincoln Phenotypic diversity in Sorghum bicolor

Oklahoma State University - Genomic SSR markers in African bermudagrass

West Virginia State Integrated genetic map of watermelon

West Virginia State - Linkage disequilibrium & population-structure analysis among pepper cultivars

University of Georgia Exon capture system for entire class Ouphiuroidea

University of Georgia - Mapping of genes for soybean nematodes

RNA (12)

Cornell University RNA Creating small transcription activating RNAs

Kyungpook National University South Korea_THO2 is required for microRNA production in Arabidopsis

University of Lausanne Switzerland Conserved microRNA editing

EPFL Switzerland RNA sequencing_Screen to identify inhibitors of mycobacterial virulence protein secretion

Cornell University RNA Canine corneal organ culture model to study acute herpes keraitis

Cornell University Method for isolating high quality RNA

University of Wisconsin-Madison - RNA sequencing sample quality checks of bovine embryo

Ligue Nationale contre le Cancer France MicroRNA sequencing from 78 adrenocortical carcinomas

University of Tasmania Australia RNA quantification Listeria monocytogenes proteomic responses and associated influence of strain genetics

University of Arizona RNA Transcriptome-based identification of ABC transporters in Lygus hesperus

USDA Missouri RNA Induction of antimicrobial peptides in infected tissues of larval heliothis virescens

Genethon INSERM CNRS France Serum profiling to identify miRNA and miRNA biomarkers

CRISPR (1)

TILLiNG (2)

PCR (5)

Microsatellites (3)

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